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NormExpression (version 0.1.1)

Normalize Gene Expression Data using Evaluated Methods

Description

It provides a framework and a fast and simple way for researchers to evaluate methods (particularly some data-driven methods or their own methods) and then select a best one for data normalization in the gene expression analysis, based on the consistency of metrics and the consistency of datasets. Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Deshui Yu, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan and Shan Gao (2018) .

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Version

Install

install.packages('NormExpression')

Monthly Downloads

193

Version

0.1.1

License

Artistic-2.0

Maintainer

Shan Gao

Last Published

March 20th, 2024

Functions in NormExpression (0.1.1)

getCor

getCor
getAUCVC

getAUCVC
getNormMatrix

getNormMatrix
identifyUbq

identifyUbq
gridAUCVC4Matrices

gridAUCVC4Matrices
optTU

optTU
plotCVs

plotCVs
identifyUbqRepeat

identifyUbqRepeat
nonzeroRatio2AUCVC

nonzeroRatio2AUCVC
getCorMedians

getCorMedians
getFactors

getFactors
gridAUCVC

gridAUCVC
plotHC

plotHC
scRNA663_factors

scRNA663_factors
plotCors

plotCors
scRNA663

scRNA663
calcFactorWeighted

calcFactorWeighted
filteredZero

filteredZero
change_colours

change_colours
calcFactorUpperquartile

calcFactorUpperquartile
CV2AUCVC

CV2AUCVC
bkRNA18_factors

bkRNA18_factors
estimateSizeFactorsForMatrix

estimateSizeFactorsForMatrix
calcFactorRLE

calcFactorRLE
gatherCors

gatherCors
gatherCors4Matrices

gatherCors4Matrices
getArea

getArea
getAUCVCs

getAUCVCs
findGenes

findGenes
gatherFactors

gatherFactors
bkRNA18

bkRNA18
getCV

getCV
gatherCVs4Matrices

gatherCVs4Matrices
gatherCVs

gatherCVs