fitOneOxBS: Fit one OxyBS result
Description
Uses maximum likelihood to estimate (C,5mC,5hmC) for one CpG and one specimenUsage
fitOneOxBS(betaBS, betaOxBS, signalBS, signalOxBS, eps=1E-5)
Arguments
betaBS
beta value from conventional bisulfite conversion
betaOxBS
beta value from oxy-bisulfite conversion
signalBS
total signal from conventional bisulfite conversion
signalOxBS
total signal from oxy-bisulfite conversion
eps
small positive value representing numerical zero
Value
(C,5mC,5hmC) for one CpG and one specimen.
Details
Uses maximum likelihood to estimate (C,5mC,5hmC) for one CpG and one specimen;
not typically called by user.