MINetwork_matrix_topEdges

Mutual information network connection matrix generation (mrnet algorithm) using the parmigene package. Mutual information calculated with infotheo package.

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

Ye Li

Partition-Assisted Clustering and Multiple Alignments of
Networks

Dangna Li

MINetwork_matrix_topEdges function

<dl><dt>dataMatrix</dt>
<dd>data matrix</dd>
<dt>threshold</dt>
<dd>the number of edges to draw for each subpopulation mutual information network</dd></dl>

Arguments

Mutual information network connection matrix generation (mrnet algorithm) using the parmigene package. Mutual information calculated with infotheo package. — MINetwork_matrix_topEdges

<dl>

<dt>dataMatrix</dt>
<dd>data matrix</dd>


<dt>threshold</dt>
<dd>the number of edges to draw for each subpopulation mutual information network</dd>

</dl>

Mutual information network connection matrix generation (mrnet algorithm) using the parmigene package. Mutual information calculated with infotheo package.

MINetwork_matrix_topEdges: Mutual information network connection matrix generation (mrnet algorithm) using the parmigene package. Mutual information calculated with infotheo package.

Description

Usage

Value

Arguments