PBSadmb (version 1.1.4)

plotMC: Plot Results of MCMC Simulation

Description

Plot results of an ADMB MCMC simulation using various plot methods.

Usage

plotMC(prefix, act="pairs", pthin=1, useCols=NULL)

Arguments

prefix

string name prefix of the ADMB project (e.g., "vonb").

act

string scalar: action describing plot type (current choices: "pairs", "eggs", "acf", "trace", and "dens").

pthin

numeric scalar indicating interval at which to collect records from the .mc.dat file for plotting.

useCols

logical vector indicating which columns of .mc.dat to plot.

Author

Rowan Haigh, Program Head -- Offshore Rockfish
Pacific Biological Station (PBS), Fisheries & Oceans Canada (DFO), Nanaimo BC
locus opus: Institute of Ocean Sciences (IOS), Sidney BC
Last modified Rd: 2009-09-10

See Also

runMC, showADargs