PBSadmb v1.1.4

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ADMB for R Using Scripts or GUI

A collection of software provides R support for 'ADMB' (Automatic Differentiation Model Builder) and a 'GUI' interface facilitates the conversion of 'ADMB' template code to 'C code' followed by compilation to a binary executable. Stand-alone functions can also be run by users not interested in clicking a 'GUI'.

Functions in PBSadmb

Name Description
cleanAD Clean ADMB-Generated Files from the Working Directory
runAD Run an Executable Binary File
convOS Convert Text Files to Default OS Format
runMC Run an Executable Binary File in MCMC Mode
readADpaths Read ADMB Paths From a Text File
readRep Read an ADMB Report into R Memory
suggestPath Suggest a Path to a Specified Program
convAD Convert TPL Code to CPP Code
writeADopts Writes the ADMB Options List from Memory to a File
atget Get/Print Objects From or Put Objects Into Temporary Work Environment
startLog Start a Log File
copyFiles Copy System Files
linkAD Link Object Files to Make an Executable
makeAD Make an Executable Binary File from a C File
showADargs Show All Arguments for an ADMB Executable
setADpath Create ADMB Options List
setupAD Set Up Paths for PBSadmb
editAD Edit ADMB Files
editADfile Edit an ADMB File
compAD Compile C Code
appendLog Append Data to Log File
checkADopts Check ADMB Options for Path Integrity
PBSadmb PBS ADMB Package
admb Start the PBSadmb GUI for ADMB
plotMC Plot Results of MCMC Simulation
readADopts Read an ADMB Options List into Memory From a File
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Vignettes of PBSadmb

Name
PBSadmbIntro.Rnw
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Details

Date 2019-03-19
Copyright 2008-2019, Fisheries and Oceans Canada
License GPL (>= 2)
URL https://github.com/pbs-software/pbs-admb, https://github.com/pbs-software/pbs-modelling
NeedsCompilation no
Packaged 2019-03-19 18:05:49 UTC; haighr
Repository CRAN
Date/Publication 2019-03-19 18:53:36 UTC

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