RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.34.0) of this package.
Take me there.
PCpheno (version 1.28.0)
Phenotypes and cellular organizational units
Description
Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.
Copy Link
Copy
Link to current version
Version
Version
1.34.0
1.32.0
1.30.0
1.28.0
Down Chevron
Version
1.28.0
License
Artistic-2.0
Maintainer
Nolwenn Le Meur
Last Published
January 1st, 1970
Functions in PCpheno (1.28.0)
Search functions
complexStatus
Complex Status
categoryToEntrezBuilder
Return a list mapping multi-protein complexes IDs to YEAST ids
deResult-class
A class for representing the result of a densityEstimate test.
DudleyPheno
List of fitness defect score generated from Dudley et al 2005
buildFDMat
Build fitness defect contingency matrix
getDescr
Get formatted annotation data
getFDgene
Get fitness defect genes
CoHyperGParams-class
Class "CoHyperGParams"
CoHyperGResult-class
Class "CoHyperGResult"
densityEstimate
Observed versus Expected Ratios
KastenmayerRaw
Data from Kastenmayer et al. 2006
GiaeverPheno
List of fitness defect score generated from Giaever et al 2002
PCpheno-package
Linkage between Protein Complexes, Pathways, and Phenotypes
graphTheory
Graph theory to test associations between two or more relationships
overlap
Count the number of proteins shared by protein complexes
KEGG2SCISI
Mapping between KEGG and ScISI
LesageRaw
Data from Lesage et al. 2005
OsterbergRaw
Data from Osterberg at al. 2006
gtResult-class
A class for representing the result of a graphTheory test.
HI
Data from Deutshbauer et al. (2005)
YEASTOHNOLOG
List of ohnolog gene pairs from Byrne, K.P and Wolfe, K.H (2005)
plot
Graphical method to represent the result of the density or graph test.
SGDphenoL
Saccharomyces Genome Database list of phenotypic data
ppiInteract
Test the association between AP-MS data and phenotype
testResult-class
A virtual class for representing the result of a test.
reduceM
Resize a matrix
truncName
Truncate character strings