PCpheno (version 1.28.0)

KEGG2SCISI: Mapping between KEGG and ScISI

Description

Count the number of genes shared between a KEGG pathway and a protein complex from the ScISI interactome.

Usage

KEGG2SCISI(pw, pc, pcMat, pwMat)

Arguments

pw

list of pathway names

pc

list of complex names

pwMat

pathway incidence matrix

pcMat

complex incidence matrix

Value

matrix

See Also

ScISI KEGG

Examples

data(ScISIC)
## Mapping from Yeast genes to KEGG pathways.
KeggMat <- PWAmat("org.Sc.sgd")
KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat =
KeggMat, pcMat =ScISIC)