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PERMANOVA (version 0.2.0)

Multivariate Analysis of Variance Based on Distances and Permutations

Description

Calculates multivariate analysis of variance based on permutations and some associated pictorial representations. The pictorial representation is based on the principal coordinates of the group means. There are some original results that will be published soon.

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Version

Install

install.packages('PERMANOVA')

Monthly Downloads

277

Version

0.2.0

License

GPL (>= 2)

Maintainer

Laura Vicente-Gonzalez

Last Published

September 6th, 2021

Functions in PERMANOVA (0.2.0)

Cumsum

Cumulative sums
AddClusterToBiplot

Add Clusters to a Biplot Object
BiplotVar

Draws a variable on a biplot
ConstructContrasts

Construction of contrasts for several factors
BootDistCanonicalAnalysis

Canonical Analysis based on Distances
DistBinary

Distances for binary data
BinaryVectorCheck

Checks if a vector is binary
BootDisMANOVA

Multivariate Analysis of Variance based on Distances and Bootstrap
ConcEllipse

Non-parametric concentration ellipses
DistContinuous

Distances among individuals with continuous data
Dlines

Connects two sets of points by lines
mgc

Mixture Gaussian Clustering
MANOVA.Estimation

Estimation of the MANOVA parameters.
FactorToBinary

Converts a Factor into its indicator matrix
ProcrustesSimple

Simple Procrustes Analysis
TextSmart

Labels of a Scatter
GetScalesBiplot

Calculates the scales for the variables on a linear biplot
PERMANOVA.Estimation

Estimation of the PERMANOVA parameters
Ones

Matrix of ones
PERMANOVA

PERMANOVA: MANOVA based on distances
Ginv

G inverse
summary.BootDisMANOVA

Summarizes the results of a Bootstrap Manova based on distances
IniTransform

Initial transformation of a data matrix
PerMANOVA.Simple

PERMANOVA from a matrix of distancies
wine

Wine data
Zeros

Matrix of zeros
inbox

Checks if a point is inside a box
plot.MANOVA.Biplot

Plots the results of a MANOVA Biplot
spiders

Hunting Spiders Data
plot.BootCanonAnalysis

Plots the principal coordinates of the group centers and the bootstrap confidence regions
plot.PERMANOVA

Plots the results of the PERMANOVA function
MANOVA

Multivariate Analysis of Variance (MANOVA)
spidersb

Hunting Spiders Data
plot.MANOVA

Plots the results of a MANOVA Biplot
plot.ellipse

Plot a concentration ellipse
PlotClustersBiplot

Plot clusters on a biplot.
Circle2

Draws a circle.
PostHocComp

Post Hoc pairwise comparisons