Plots the principal coordinates of the group centers and the bootstrap confidence regions.
# S3 method for BootCanonAnalysis
plot(x, A1 = 1, A2 = 2, centred = FALSE, confidence = 0.9,
PlotReplicates = TRUE, MeanCex = 1.5, MeanPch = 16,
Title = "Bootstrap Canonical Analysis based on Distances",
LabelMeans = TRUE, MeanLabels = NULL, MeanColors = NULL, SmartLabels = TRUE,
BootstrapPlot = "el", PlotIndiv = FALSE, LabelInd = FALSE, IndLabels = NULL,
IndColors = NULL, CexInd = 0.5, PchInd = 1, ConvexHullsInd = FALSE, ...)The object to plot.
Dimension to plot on the X axis.
Dimension to plot on the Y axis.
Plot centers of the bootstrap regions.
Confidence for the bootstrap regions.
Should all the bootstrap replicates be plotted.
Size of the points and text representing the centroids of the groups.
Marks of the points and text representing the centroids of the groups.
Main title of the graph.
Should the groups be labelled?
Labels for the group means.
Colors for the group means.
Should the labels be placed in a smart way?
Should the bootstrap regions be plotted?
Should the individuals be plotted?
Should individuals be labelled?
Labels for the individuals.
Colors for the rows (individuals).
Sizes for the rows (individuals).
Marks for the rows (individuals).
Convex hulls containing the individuals of each group.
Any other graphical parameters.
The plot.
Plots the principal coordinates of the means of the groups with the confidence bootstrap region.