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PGSEA (version 1.40.0)

Parametric Gene Set Enrichment Analysis

Description

Parametric Analysis of Gene Set Enrichment

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Version

Version

1.40.0

License

GPL-2

Maintainer

Karl Dykema

Last Published

February 15th, 2017

Functions in PGSEA (1.40.0)

nbEset

Reduced Neuroblastoma data set
PGSEA

Parametric Gene Set Enrichment Analysis
VAIgsc

Molecular Concepts (Gene Sets) prepared at VAI
editSmc

Edit "smc" objects
aggregateExprs

Aggregate expression data
convertSmc

Convert Entrez ID based "smc" object
VAImcs

Molecular Concepts prepared at VAI
go2smc

Gene Ontology 2 "smc"
readGmt

readGmt
readSmc

Read SMC files
writeGmt

writeGmt
writeSmc

writeSmc
GOLUBmcs

Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc

KEGG pathway to "smc"
scanSmc

Scan through smc objects
smcPlot

Plot PGSEA results