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PGSEA (version 1.40.0)
Parametric Gene Set Enrichment Analysis
Description
Parametric Analysis of Gene Set Enrichment
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1.46.0
1.44.0
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1.40.0
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Version
1.40.0
License
GPL-2
Maintainer
Karl Dykema
Last Published
March 22nd, 2012
Functions in PGSEA (1.40.0)
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nbEset
Reduced Neuroblastoma data set
PGSEA
Parametric Gene Set Enrichment Analysis
VAIgsc
Molecular Concepts (Gene Sets) prepared at VAI
editSmc
Edit "smc" objects
aggregateExprs
Aggregate expression data
convertSmc
Convert Entrez ID based "smc" object
VAImcs
Molecular Concepts prepared at VAI
go2smc
Gene Ontology 2 "smc"
readGmt
readGmt
readSmc
Read SMC files
writeGmt
writeGmt
writeSmc
writeSmc
GOLUBmcs
Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc
KEGG pathway to "smc"
scanSmc
Scan through smc objects
smcPlot
Plot PGSEA results