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PGSEA (version 1.44.0)

Parametric Gene Set Enrichment Analysis

Description

Parametric Analysis of Gene Set Enrichment

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Version

Version

1.44.0

License

GPL-2

Maintainer

Karl Dykema

Last Published

February 15th, 2017

Functions in PGSEA (1.44.0)

readGmt

readGmt
readSmc

Read SMC files
aggregateExprs

Aggregate expression data
convertSmc

Convert Entrez ID based "smc" object
VAIgsc

Molecular Concepts (Gene Sets) prepared at VAI
VAImcs

Molecular Concepts prepared at VAI
editSmc

Edit "smc" objects
writeGmt

writeGmt
go2smc

Gene Ontology 2 "smc"
writeSmc

writeSmc
nbEset

Reduced Neuroblastoma data set
PGSEA

Parametric Gene Set Enrichment Analysis
GOLUBmcs

Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc

KEGG pathway to "smc"
scanSmc

Scan through smc objects
smcPlot

Plot PGSEA results