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PGSEA (version 1.44.0)
Parametric Gene Set Enrichment Analysis
Description
Parametric Analysis of Gene Set Enrichment
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1.46.0
1.44.0
1.42.0
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Version
1.44.0
License
GPL-2
Maintainer
Karl Dykema
Last Published
March 22nd, 2012
Functions in PGSEA (1.44.0)
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readGmt
readGmt
readSmc
Read SMC files
aggregateExprs
Aggregate expression data
convertSmc
Convert Entrez ID based "smc" object
VAIgsc
Molecular Concepts (Gene Sets) prepared at VAI
VAImcs
Molecular Concepts prepared at VAI
editSmc
Edit "smc" objects
writeGmt
writeGmt
go2smc
Gene Ontology 2 "smc"
writeSmc
writeSmc
nbEset
Reduced Neuroblastoma data set
PGSEA
Parametric Gene Set Enrichment Analysis
GOLUBmcs
Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc
KEGG pathway to "smc"
scanSmc
Scan through smc objects
smcPlot
Plot PGSEA results