PING (version 2.16.0)

CoverageTrack: Reads coverage track

Description

This track displays the coverage of the genomic region by the reads used as input for the segmentation step.

Usage

CoverageTrack(ping, reads, chr, gen="gen", FragmentLength=200, name="XSET")

Arguments

ping

An object of class pingList. The output of PING.

reads

An object of class GRanges. The reads used in the segmentation process.

chr

A character string for the chromosome name.

gen

An optional character string for the genome name.

FragmentLength

An integer. The fixed length of the reads. If PE is set to TRUE, this argument can be ignored.

name

A character string. The title of the track.

Value

This function returns an object of class AnnotationTrack.

See Also

postPING plotSummary AnnotationTrack plotTracks