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PING (version 2.16.0)

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Description

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

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Version

Version

2.16.0

License

Artistic-2.0

Maintainer

Renan Sauteraud

Last Published

February 15th, 2017

Functions in PING (2.16.0)

ping

Estimation of binding site positions
NucleosomeTrack

Track for the Nucleosome position
PICS_IMPORT

PICS functions.
ping-class

The ping class
CoverageTrack

Reads coverage track
plotSummary

Plot a summary of the prediction for given ranges.
RawReadsTrack

Raw reads density track
pingList-class

The ping class
postPING

Post process Estimation of binding site positions obtained from PING
pingError-class

The ping class
summary

summary PING
show

show PING
segmentPING

Segment the genome into candidate regions