NucleosomeTrack

A <code>data.frame</code> or <code>pingList</code>. The output of <code>postPING</code> or <code>PING</code>.

A character string for the chromosome name.

An optional character string for the genome name.

A <code>logical</code>. If set to FALSE, the track showing the histogram of the score is removed.

scoreTrack

A <code>numeric</code>. Nucleosomes predicted with a score inferior to this threshold are removed.

scoreThreshold

A character string for the title of the track.

name

A list of supplemental argument that can be provided to the <code><a rd-options="Gviz" href="/link/AnnotationTrack?package=PING&version=2.16.0&to=Gviz" data-mini-rdoc="Gviz::AnnotationTrack">AnnotationTrack</a></code> track constructor.


This track actually creates two tracks: it displays the position of the predicted nucleosomes as well as the standard error associated with each prediction and an histogram of the score.


functions

Probabilistic inference of ChIP-Seq using an empirical
Bayes mixture model approach.

Renan Sauteraud

PING

Probabilistic inference for Nucleosome Positioning with
MNase-based or Sonicated Short-read Data

NucleosomeTrack function

A list of supplemental argument that can be provided to the <code><a rd-options='Gviz' href='AnnotationTrack'>AnnotationTrack</a></code> track constructor.

NucleosomeTrack: Track for the Nucleosome position

Description

Usage

Arguments

Value

See Also