Usage
plotSummary(PS, ping, reads, chr, gen="gen", from=NULL, to=NULL, FragmentLength=200, title="", scoreThreshold=0.05)
Arguments
PS
A data.frame. The output postPING. If a list of data.frame is passed, multiple NucleosomeTrack will be plotted.
ping
A pingList. The output of PING.
reads
A GRanges object. The reads used in the segmentation process.
chr
A character string for the chromosome name.
gen
An optional character string for the genome name.
from
An integer, the first base of the plot
to
An integer, the last base of the plot
FragmentLength
An integer, the length of XSET profile extension in the CoverageTrack. This argument will be ignored if the reads are paired-end sequencing data.
title
An optional character string that can be prepend to the automatically generated title.
scoreThreshold
A numeric. Removes nucleosome with a score inferior to the threshold from the plot.