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PLSbiplot1 (version 0.1)

The Partial Least Squares (PLS) Biplot

Description

Principal Component Analysis (PCA) biplots, Covariance monoplots and biplots, Partial Least Squares (PLS) biplots, Partial Least Squares for Generalized Linear Model (PLS-GLM) biplots, Sparse Partial Least Squares (SPLS) biplots and Sparse Partial Least Squares for Generalized Linear Model (SPLS-GLM) biplots.

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Version

Install

install.packages('PLSbiplot1')

Monthly Downloads

1

Version

0.1

License

GPL-2

Maintainer

Opeoluwa F Oyedele

Last Published

November 6th, 2014

Functions in PLSbiplot1 (0.1)

PLS.GLM.biplot_SIMPLS

The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm
PLS.GLM.biplot_no_labels

The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM), with the labels of the samples, coefficient points and tick markers excluded
mod.VIP

The Variable Importance in the Projection (VIP) values
PLS.GLM

Partial Least Squares-Generalized Linear Model (PLS-GLM) algorithm
SPLS.GLM.biplot_no.SN

The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM), with the labels of the sample points excluded
SPLS.GLM.biplot_bvec

A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM)
PLS.biplot_no_labels

The Partial Least Squares (PLS) biplot with the labels of the samples, coefficient points and tick markers excluded
SPLS.GLM

Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm
PLS.biplot.area

The Partial Least Squares (PLS) biplot with triangles for estimating the Partial Least Squares Regression (PLSR) coefficients
PLS.GLM_SIMPLS

Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted using the SIMPLS algorithm
PLS.binomial.GLM

Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted for Binomial y
mod.PCR

Principal Component Regression (PCR)
SPLS.biplot

The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS)
cov.monoplot

The covariance monoplot
PLS.GLM.biplot_SIMPLS_no.SN

The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm, with the labels of the sample points excluded
PCA.biplot

The Principal Component Analysis (PCA) biplot
SPLS.biplot_no_ax.labels

The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the tick markers excluded
mod.SIMPLS

The Statistical Inspired Modification to Partial Least Squares (SIMPLS) algorithm
SPLS.GLM.biplot

The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM)
PLS.biplot_no.SN

The Partial Least Squares (PLS) biplot with no sample points names
Mag.Bmat.plot

Magnitude of the Partial Least Squares Regression (PLSR) coefficients matrix
PLS.biplot

The Partial Least Squares (PLS) biplot
PLS.GLM.biplot_bvec

A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM)
SPLS.biplot_no_labels

The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the samples, coefficient points and tick markers excluded
mod.PCA

Principal Component Analysis (PCA)
mod.SPLS

Sparse Partial Least Squares (SPLS) algorithm
SPLS.biplot_Bmat

A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS)
mod.NIPALS

The Nonlinear Iterative PArtial Least Squares (NIPALS) algorithm
PCA.biplot_no.SN

The Principal Component Analysis (PCA) biplot with the labels of the samples points excluded
opt.penalty.values

Choosing a value for penalty parameters lambdaX and lambdaY for the Sparse Partial Least Squares (SPLS) and Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) analyses
PLS.GLM.biplot

The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM)
SPLS.binomial.GLM

Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm for Binomial y
cov.biplot

The covariance biplot
mod.KernelPLS_L

The Kernel algorithm for few(er) variables but large samples by Lindgren et al. (1993)
PLS.GLM.biplot_no.SN

The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) with the labels of the sample points excluded
mod.KernelPLS_R

The Kernel algorithm for few(er) samples but large variables by Rannar et al. (1994)
mod.MMLR

Multivariate Multiple Linear Regression (MMLR)