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PO.EN (version 1.0)

An Elastic-Net Regularized Presence-Only Model

Description

Presence-only model with Elastic Net penalty is a regularized generalized linear model training on the presence-absence response. This package provides functions for tuning and fitting the presence-only model. The presence-only model can be used to predict regulatory effects of genetic variants at sequence-level resolution by integrating a large number of epigenetic features and massively parallel reporter assays (MPRAs).

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Version

Install

install.packages('PO.EN')

Monthly Downloads

6

Version

1.0

License

GPL (>= 2)

Maintainer

Zikun Yang

Last Published

August 19th, 2020

Functions in PO.EN (1.0)

cv.PO.EN

Cross-validation function of PO-EN model
sum_compute_single_rcpp

Softthresholding computation function
example.data

Example datasets
PO.EN.predict

PO-EN predicting function
PO.EN

A robust presence-only model with Elastic Net penalty
PO.EN-package

An Elastic-Net Regularized presence-only Model