PO.EN.predict

Input design matrix. Should not include the intercept vector.

A coefficients vector from the PO-EN fitting function.

beta

A prediction function using the linear predictor of PO-EN fitting results.

Presence-only model with Elastic Net penalty is a regularized generalized linear model training on the presence-absence response. This package provides functions for tuning and fitting the presence-only model. The presence-only model can be used to predict regulatory effects of genetic variants at sequence-level resolution by integrating a large number of epigenetic features and massively parallel reporter assays (MPRAs).

Zikun Yang

PO.EN.predict: PO-EN predicting function

Description

Usage

Arguments