PROPER (version 1.4.2)

plotPowerHist: Plot the histogram of power

Description

Using histogram-alike graph to visualize the distribution of all genes and DE genes in all user specified strata.

Usage

plotPowerHist(powerOutput, simResult, main = "Histogram of power", return = FALSE)

Arguments

powerOutput

Result object from "comparePower" function.

simResult

Result object from "runSims" function.

main

Figure caption.

return

Return a matrix for average number of genes and true DE genes in each strata.

Value

A matrix of two rows. First row is for number of genes, and the second row is for number of DE genes. Columns are strata.

Examples

## Not run: 
# simOptions = RNAseq.SimOptions.2grp()
# ## run a few simulations
# simRes = runSims(Nreps=c(3,5,7), sim.opts=simOptions, nsims=5,
#                  DEmethod="edgeR")
# 
# ## using FDR 0.1 to call DE, then look at power curves and summary
# powers = comparePower(simRes)
# plotPowerHist(powers, simRes)
# ## End(Not run)