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PROPER (version 1.4.2)

PROspective Power Evaluation for RNAseq

Description

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

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Version

Version

1.4.2

License

GPL

Maintainer

Hao Wu

Last Published

February 15th, 2017

Functions in PROPER (1.4.2)

summaryPower

Generate a summary table for power analysis result
runSims

Run a number of RNA-seq simulations and DE detections
simRNAseq

Simulate RNA-seq count data
plots

Plot the stratified curves for power-related quantities
plotPowerHist

Plot the histogram of power
RNAseq.SimOptions.2grp

Set up options for simulating RNA-seq data in two-group comparison.
power.seqDepth

Estimate the marginal power under different sequencing depth
estParam

estimate simulation parameters from a count table
comparePower

Compute the power-related quantities from simulation results
param

Some existing RNA-seq and gene expression microarray data