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PeakSegDisk (version 2018.11.28)

Disk-Based Implementation of PeakSegFPOP

Description

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

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Version

Install

install.packages('PeakSegDisk')

Monthly Downloads

671

Version

2018.11.28

License

GPL-3

Maintainer

Toby Hocking

Last Published

December 3rd, 2018

Functions in PeakSegDisk (2018.11.28)

PeakSegFPOP_disk

PeakSegFPOP on disk
problem.PeakSegFPOP

problem PeakSegFPOP
fread.last

fread last
problem.sequentialSearch

problem sequentialSearch
mclapplyError

mclapplyError
fread.first

fread first
col.name.list

col name list
Mono27ac

A small ChIP-seq data set in which peaks can be found using PeakSegFPOP