PeakSegDisk v2018.11.28
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Disk-Based Implementation of PeakSegFPOP
Disk-based implementation of
Functional Pruning Optimal Partitioning with up-down constraints
<arXiv:1810.00117> for single-sample peak calling
(independently for each sample and genomic problem),
can handle huge data sets (10^7 or more).
Functions in PeakSegDisk
| Name | Description | |
| PeakSegFPOP_disk | PeakSegFPOP on disk | |
| problem.PeakSegFPOP | problem PeakSegFPOP | |
| fread.last | fread last | |
| problem.sequentialSearch | problem sequentialSearch | |
| mclapplyError | mclapplyError | |
| fread.first | fread first | |
| col.name.list | col name list | |
| Mono27ac | A small ChIP-seq data set in which peaks can be found using PeakSegFPOP | |
| No Results! | ||
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Details
| Type | Package |
| License | GPL-3 |
| NeedsCompilation | yes |
| Packaged | 2018-11-28 19:07:33 UTC; tdhock |
| Repository | CRAN |
| Date/Publication | 2018-12-03 12:42:36 UTC |
| imports | data.table (>= 1.9.8) , parallel |
| suggests | ggplot2 , penaltyLearning , testthat |
| depends | R (>= 2.10) |
| Contributors | Toby Hocking |
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