PeakSegDisk v2018.11.28

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Disk-Based Implementation of PeakSegFPOP

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints <arXiv:1810.00117> for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

Functions in PeakSegDisk

Name Description
PeakSegFPOP_disk PeakSegFPOP on disk
problem.PeakSegFPOP problem PeakSegFPOP
fread.last fread last
problem.sequentialSearch problem sequentialSearch
mclapplyError mclapplyError
fread.first fread first
col.name.list col name list
Mono27ac A small ChIP-seq data set in which peaks can be found using PeakSegFPOP
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Details

Type Package
License GPL-3
NeedsCompilation yes
Packaged 2018-11-28 19:07:33 UTC; tdhock
Repository CRAN
Date/Publication 2018-12-03 12:42:36 UTC

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