Mono27ac

<p>The data come from an H3K27ac ChIP-seq experiment which was aligned to
  the human reference genome (hg19), aligned read counts were used to
  produce the coverage data; looking at these data in a genome browser
  was used to produce the labels.</p>

datasets

Disk-based implementation of
Functional Pruning Optimal Partitioning with up-down constraints
<arXiv:1810.00117> for single-sample peak calling
(independently for each sample and genomic problem),
can handle huge data sets (10^7 or more).

Toby Hocking

PeakSegDisk

Disk-Based Implementation of PeakSegFPOP

Mono27ac function

<p>A list of 2 data.tables: coverage has 4 columns (chrom, chromStart,
chromEnd, count=number of aligned reads at each position on
chrom:chromStart-chromEnd); labels has 4 columns (chrom, chromStart,
chromEnd, annotation=label at chrom:chromStart-chromEnd).</p>

Mono27ac: A small ChIP-seq data set in which peaks can be found using PeakSegFPOP

Description

Usage

Arguments

Format