Calculates the allelic richness for a genind object
Calculates pairwise fsts using a genind object (very fast)
Multiple Matrix Regression with Randomization analysis
Function for optimising a landscape genetic analysis based on resistance layers
Bilby data set
A simulated genind data set with spatial coordinates
Function to add a polygon to a landscape
Function to execute emigration on a pops object
Individual genetic distance calculation based on Kosman & Leonhard 2005
Function converts pops to a genind object
Partial Mantel tests on costdistance matrices
Function to calculate dispersal distances based on cost distances
Analysing population genetic data within a simple framework
Run forward step generations a popgen simulation
Least-cost path analysis based on a friction matrix
Function to add lines to landscape
Function to convert textfiles into a genind object (the format required for popgenreport)
Counts and visualises allele frequencies across loci and subpopulations
Spatial autocorrelation following Smouse and Pekall 1999
Initialise a pops object fo a a popgen simulation
Calculates cost distances for a given landscape (resistance matrix)
Function to execute mutation on a pop data.frame
a simulated friction map
Checks for the presence of and determine the frequency of null alleles
Individual genetic distance calculation based on Smouse and Peakall 1999
Function to execute reproduction on a pop data.frame
Create a landscape genetic report
This is the main function of the package. It analyses an object of class genind
and then creates a report containing the results of the analysis. There are several routines that can be optionally included in the analysis and there are multip output options including a PDF with the report, R-code and an object (fname.results
) containing all of the results, which can be used for further analyses.