ProCoNA (version 1.10.0)

getFisherMatrix: getFisherMatrix

Description

Fisher's exact test pairwise on modules.

Usage

getFisherMatrix(peps1, peps2, colors1, colors2)

Arguments

peps1

Names of entities in the network (nodes of network 1)

peps2

Names of entities in the network (nodes of network 2)

colors1

the module assignments for network 1

colors2

the module assignments for network 2

Value

Examples

data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
#net2 <- buildProconaNetwork("peptide network", peptideData + 0.3*rnorm(length(peptideData)), pow=12)
getFisherMatrix(peptides(net1), peptides(net2), mergedColors(net1), mergedColors(net2))