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ProCoNA (version 1.10.0)
Protein co-expression network analysis (ProCoNA).
Description
Protein co-expression network construction using peptide level data, with statisical analysis. (Journal of Clinical Bioinformatics 2013, 3:11 doi:10.1186/2043-9113-3-11)
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Version
Version
1.10.0
1.8.0
1.6.0
1.4.1
Version
1.10.0
License
GPL (>= 2)
Maintainer
David L Gibbs
Last Published
February 15th, 2017
Functions in ProCoNA (1.10.0)
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buildProconaNetwork
buildProconaNetwork
peptideConnectivityTest
peptideConnectivityTest
bootstrapProconaNetwork
bootstrapProconaNetwork
procona-package
Peptide co-expression network construction.
utri
utri
MMvsPSallModules
MMvsPSallModules
getFisherMatrix
getFisherMatrix
moduleMemberCorrelations
moduleMemberCorrelations
goStatTest
goStatTest
runningStats
runningStats
peptideCorrelationTest
peptideCorrelationTest
compareNetworksWithFishersExactTest
compareNetworksWithFishersExactTest
toPermTest
toPermTest
compareNetworksWithFishersExactTestProcona
compareNetworksWithFishersExactTestProcona
MMvsPS
Module members vs Peptide Significance
i2col
i2col
c2i
c2i
correlationWithPhenotypesHeatMap
correlationWithPhenotypesHeatMap
ppiPermTest
ppiPermTest
hclust-class
Class
"hclust"
i2c
i2c
getPeptideNAs
getPeptideNAs
modulePhenotypeCorrelations
modulePhenotypeCorrelations
proconaNet-class
proconaNet S4 class
subsetModCors
subsetModCors
plotNet
plotNet
Accessors
Accessors for the proconaNet S4 class
corBootstrap
corBootstrap
printNet
printNet
ProCoNA-Data
A simulated mass tag data base
proconaVersionFun
Procona Software Version
orderMatrixIndex
orderMatrixIndex
subsetPeptideData
subsetPeptideData