toPermTest

toPermTest,proconaNet,numeric-method

pnet

numPermutes

Uses the procona network object,
the data with peptides as columns, samples in rows.
And the power that the net was built at
the number of permutations to do...
Modules are permuted and mean topological overlap
is recorded, constructing the null.  The number
of random permutations with mean TO greater than
observed provides the p-value.

Protein co-expression network construction using peptide
level data, with statisical analysis. (Journal of Clinical
Bioinformatics 2013, 3:11 doi:10.1186/2043-9113-3-11)

David L Gibbs

ProCoNA

Protein co-expression network analysis (ProCoNA).

toPermTest function

Uses the procona network object,
the data with peptides as columns, samples in rows.
And the power that the net was built at
the number of permutations to do...
Modules are permuted and mean topological overlap
is recorded, constructing the null.  The number
of random permutations with mean TO greater than
observed provides the p-value.

toPermTest: toPermTest

Description

Usage

Arguments

Value

Examples