Learn R Programming
⚠️There's a newer version (0.7.16.3) of this package.Take me there.

R2admb (version 0.7.13)

'ADMB' to R Interface Functions

Description

A series of functions to call AD Model Builder (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

Copy Link

Version

Install

install.packages('R2admb')

Monthly Downloads

742

Version

0.7.13

License

GPL

Maintainer

Ben Bolker

Last Published

April 13th, 2015

Functions in R2admb (0.7.13)

compile_admb

Compile ADMB files, run, read output
run.control

set run options for running ADMB via R
do_admb

Compile and/or run an ADMB model, collect output
admb_version

Query ADMB version
extract_gradient

Extract gradients
AIC.admb

Standard accessor functions for ADMB model fits
read_pars

Read in parameters from an AD Model Builder run
write_pin

Write parameter and data files for ADMB
read_plt

Read in ADMB profile file
mcmc.control

Control options for MCMC after ADMB fitting
find_large_cor

Find large correlations
setup_admb

Set up AD Model Builder environment variables
R2admb-package

ADMB to R interface functions
plot.admb_hist

Plot MCMC histogram