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R2admb (version 0.7.16)

'ADMB' to R Interface Functions

Description

A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

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Version

Install

install.packages('R2admb')

Monthly Downloads

742

Version

0.7.16

License

GPL

Maintainer

Ben Bolker

Last Published

October 30th, 2017

Functions in R2admb (0.7.16)

find_large_cor

Find large correlations

mcmc.control

Control options for MCMC after ADMB fitting

setup_admb

Set up AD Model Builder environment variables

write_pin

Write parameter and data files for ADMB

plot.admb_hist

Plot MCMC histogram

read_pars

Read in parameters from an AD Model Builder run

do_admb

Compile and/or run an ADMB model, collect output

extract_gradient

Extract gradients

AIC.admb

Standard accessor functions for ADMB model fits

R2admb-package

ADMB to R interface functions

read_plt

Read in ADMB profile file

run.control

set run options for running ADMB via R

admb_version

Query ADMB version

compile_admb

Compile ADMB files, run, read output