R2admb v0.7.16

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'ADMB' to R Interface Functions

A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

Functions in R2admb

Name Description
find_large_cor Find large correlations
mcmc.control Control options for MCMC after ADMB fitting
setup_admb Set up AD Model Builder environment variables
write_pin Write parameter and data files for ADMB
plot.admb_hist Plot MCMC histogram
read_pars Read in parameters from an AD Model Builder run
do_admb Compile and/or run an ADMB model, collect output
extract_gradient Extract gradients
AIC.admb Standard accessor functions for ADMB model fits
R2admb-package ADMB to R interface functions
read_plt Read in ADMB profile file
run.control set run options for running ADMB via R
admb_version Query ADMB version
compile_admb Compile ADMB files, run, read output
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Vignettes of R2admb

Name
auto/R2admb.el
ESA1009.bst
Gopher.tpl
R2admb.Rnw
R2admb.bib
ReedfrogSizepred.tpl
ReedfrogSizepred0.tpl
ReedfrogSizepred0_gen.tpl
ReedfrogSizepred1.tpl
Reedfrog_runs.R
Reedfrog_runs.RData
TODO
TODO_2
toy1.tpl
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Details

Type Package
Date 2017-10-29
SystemRequirements AD Model Builder
VignetteBuilder knitr
License GPL
LazyLoad yes
Repository CRAN
NeedsCompilation no
RoxygenNote 6.0.1
Packaged 2017-10-30 00:29:24 UTC; bolker
Date/Publication 2017-10-30 08:49:52 UTC

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