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RAC

git repository for R package RAC
check the paper at: https://doi.org/10.1371/journal.pone.0195732

Install

devtools::install_github("damianobaldan/RAC", build_vignettes = TRUE)

Changelog

1.5.5 removed dependencies from rgdal rgeos and maptools

1.5.4 first upload on GitHub

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Version

Install

install.packages('RAC')

Monthly Downloads

172

Version

1.5.5

License

MIT + file LICENSE

Maintainer

Baldan D.

Last Published

May 2nd, 2023

Functions in RAC (1.5.5)

Bass_spatial_post

Postprocess the Mussel spatialized model results

Bass_spatial_dataloader

Function that loads forcings data for Bass spatialized model and performs the interpolation

Bream_spatial_RKsolver

Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model

Bass_spatial_pre

Bass bioenergetic spatialized model preprocessor

Bream_spatial_dataloader

Function that loads forcings data for Bream spatialized model and performs the interpolation

Bass_spatial_pre_int

Bass bioenergetic spatialized model preprocessor - used inside spatialization loop

Bream_ind_equations

Seabream bioenergetic individual model differential equations

Bream_ind_dataloader

Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolation

Bream_pop_RKsolver

Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta method

Seabass bioenergetic population model

Function that runs the Monte Carlo simulation for the Seabass population model

Bream_pop_dataloader

Function that loads forcings data for Seabream population model and performs the interpolation

Seabass bioenergetic population model preprocessor

Bream_spatial_loop

Bream bioenergetic spatialized model - spatialization loop

Bream_spatial_main

Bream bioenergetic spatialized model - spatialization loop

Function that runs the Monte Carlo simulation for the Clam population model (alternative version)

Clam bioenergetic population model (alternative version)

Seabream bioenergetic individual model

Postprocess the Seabream indivual bioenergetic model results

Bream_spatial_skeleton

Creates the folders structure for Bream spatialized model

Seabream bioenergetic individual model preprocessor

Bass_spatial_RKsolver

Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model

Postprocess the Clam indivual bioenergetic model (alternative version) results

Bream_ind_skeleton

Creates the folders structure for Seabream individual bioenergetic model

Bream_spatial_pre_int

Bream bioenergetic spatialized model preprocessor - used inside spatialization loop

Bass_spatial_loop

Bass bioenergetic spatialized model - spatialization loop

Clam_ind_skeleton

Creates the folders structure for Clam individual bioenergetic model

Seabream bioenergetic population model preprocessor

Bream_pop_skeleton

Creates the folders structure for Seabream population model

Clam bioenergetic individual model preprocessor (alternativer version)

Clam_ind_equations

Clam bioenergetic individual model differential equations

ClamF_ind_RKsolver

Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method

Bream_spatial_post

Postprocess the Bream spatialized model results

Seabream bioenergetic population model

Bream_ind_RKsolver

Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta method

Clam_pop_RKsolver

Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta method

Bass_spatial_skeleton

Creates the folders structure for Bass spatialized model

Postprocess the Bream population bioenergetic model results

Bream_spatial_pre

Bream bioenergetic spatialized model preprocessor

Bream_pop_equations

Seabream bioenergetic population model differential equations

Clam bioenergetic individual model

Mussel_ind_main

Mussel bioenergetic individual model

Function that runs the Monte Carlo simulation for the Seabream population model

ClamF_ind_equations

Clam bioenergetic individual model differential equations (alternative version)

Clam bioenergetic individual model (alternative version)

ClamF_ind_dataloader

Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolation

Postprocess the Clam individual bioenergetic model results

Clam bioenergetic individual model preprocessor

Postprocess the Clam population bioenergetic model results (alternative model)

Clam bioenergetic population model (alternative version) preprocessor

Mussel_pop_post

Postprocess the Mussel population bioenergetic model results

Mussel_spatial_post

Postprocess the Mussel spatialized model results

Mussel_ind_post

Postprocess the Mussel indivual bioenergetic model results

Mussel_spatial_pre

Mussel bioenergetic spatialized model preprocessor

Mussel_pop_main

Mussel bioenergetic population model

ClamF_pop_equations

Clam bioenergetic population model differential equations (alternative version)

ClamF_ind_skeleton

Creates the folders structure for Clam individual bioenergetic model (alternative version)

ClamF_pop_dataloader

Function that loads forcings data for Clam population model (alternative version) and performs the interpolation

Clam_pop_dataloader

Function that loads forcings data for Clam population model and performs the interpolation

Postprocess the Clam population bioenergetic model results

Mussel_pop_RKsolver

Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta method

Mussel_pop_dataloader

Function that loads forcings data for Mussel population model and performs the interpolation

Clam_pop_equations

Clam bioenergetic population model differential equations

Mussel_pop_equations

Mussel bioenergetic population model differential equations

Mussel_ind_equations

Mussel bioenergetic individual model differential equations

Mussel_ind_dataloader

Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolation

Mussel_spatial_pre_int

Mussel bioenergetic spatialized model preprocessor - used inside spatialization loop

Mussel_pop_loop

Function that runs the Monte Carlo simulation for the Mussel population model

Mussel_spatial_RKsolver

Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model

Mussel_spatial_dataloader

Function that loads forcings data for Mussel spatialized model and performs the interpolation

Mussel_ind_RKsolver

Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method

Clam_pop_skeleton

Creates the folders structure for Clam population model

Mussel_spatial_skeleton

Creates the folders structure for Mussel spatialized model

Function that solves the population dynamics equations including discontinuities

clam_ind_RKsolver

Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta method

Clam bioenergetic population model preprocessor

ClamF_pop_skeleton

Creates the folders structure for Clam population model (alternative version)

Function that runs the Monte Carlo simulation for the Clam population model

ClamF_pop_RKsolver

Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method

Clam_ind_dataloader

Function that loads forcings data for Clam individual bioenergetic model and performs the interpolation

Mussel bioenergetic population model preprocessor

Mussel_pop_skeleton

Creates the folders structure for Mussel population model

Mussel_spatial_main

Mussel bioenergetic spatialized model - spatialization loop

Mussel_spatial_loop

Mussel bioenergetic spatialized model - spatialization loop

Clam bioenergetic population model

Mussel_ind_skeleton

Creates the folders structure for Mussel individual bioenergetic model

Mussel bioenergetic individual model preprocessor

Bass_pop_equations

Seabass bioenergetic population model differential equations

Bass_pop_dataloader

Function that loads forcings data for Seabass population model and performs the interpolation

Bass_ind_skeleton

Creates the folders structure for Seabass individual bioenergetic model

Bass_ind_dataloader

Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolation

Bass_ind_RKsolver

Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method

Seabass bioenergetic individual model

Seabass bioenergetic individual model postprocessor

Bass_pop_RKsolver

Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta method

Bass_ind_equations

Seabass bioenergetic individual model differential equations

Seabass bioenergetic individual model preprocessor

Bass_spatial_main

Bass bioenergetic spatialized model - spatialization loop

Bass_pop_skeleton

Creates the folders structure for Seabass population model

Postprocess the Seabass population bioenergetic model results