Mussel_spatial_RKsolver

Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model

Solves the individual bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass; Brigolin et al., 2014 <doi:10.3354/aei00093>) and shellfish (Mussel and Clam; Brigolin et al., 2009 <doi:10.1016/j.ecss.2009.01.029>; Solidoro et al., 2000 <doi:10.3354/meps199137>). Allows for spatialized model runs and population simulations.

Baldan D.

R Package for Aqua Culture

Palazzo D.

Porporato E.M.D

Brigolin D.

Mussel_spatial_RKsolver function

<dl><dt>Param</dt>
<dd>a vector containing model parameters</dd>
<dt>times</dt>
<dd>integration extremes and integration timestep</dd>
<dt>IC</dt>
<dd>initial condition</dd>
<dt>Tint</dt>
<dd>the interpolated water temperature time series</dd>
<dt>Phyint</dt>
<dd>the interpolated phytoplankton time series</dd>
<dt>DTint</dt>
<dd>the interpolated detritus time series</dd>
<dt>POCint</dt>
<dd>the interpolated POC time series</dd>
<dt>Ccont</dt>
<dd>the C/C content of the POC</dd>
<dt>Ncont</dt>
<dd>the N/C content of POC</dd>
<dt>Pcont</dt>
<dd>the P/C content of POC</dd>
<dt>POMint</dt>
<dd>the interpolated POM time series</dd>
<dt>TSSint</dt>
<dd>the interpolated TSS time series</dd></dl>

Arguments

Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model — Mussel_spatial_RKsolver

<dl>

<dt>Param</dt>
<dd>a vector containing model parameters</dd>


<dt>times</dt>
<dd>integration extremes and integration timestep</dd>


<dt>IC</dt>
<dd>initial condition</dd>


<dt>Tint</dt>
<dd>the interpolated water temperature time series</dd>


<dt>Phyint</dt>
<dd>the interpolated phytoplankton time series</dd>


<dt>DTint</dt>
<dd>the interpolated detritus time series</dd>


<dt>POCint</dt>
<dd>the interpolated POC time series</dd>


<dt>Ccont</dt>
<dd>the C/C content of the POC</dd>


<dt>Ncont</dt>
<dd>the N/C content of POC</dd>


<dt>Pcont</dt>
<dd>the P/C content of POC</dd>


<dt>POMint</dt>
<dd>the interpolated POM time series</dd>


<dt>TSSint</dt>
<dd>the interpolated TSS time series</dd>

</dl>

Mussel_spatial_RKsolver: Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model

Description

Usage

Value

Arguments