RAM (version 1.2.0)

transpose.LCA: Transpose OTU Tables With LCA Annotation For Each OTU

Description

Similar to transpose.OTU, but each OTU is annotated by the lowest common ancestor it was assigned to.

Usage

transpose.LCA(data)

Arguments

data

The OTU tables to be transposed. See also RAM.input.formatting.

Value

• Returns a transposed OTU table, but the colname is formatted as: LCA_otuID.

Examples

data(ITS1, ITS2)
lca.t <- transpose.LCA(data=list(ITS1=ITS1, ITS2=ITS2))