Ordination Plot For Taxa Groups Using CCA or RDA Analysis
Select METADATA Variables
Summary Of Core OTUs
Summary of Shared Taxa Across ALL Subjects
Fast Load Large OTU Table
Plot the Top Taxon Groups
Factor Formatting for RAM
Creating Plots with RAM
Data Input Formatting
Perform CCA and RDA Analysis for OTU Tables
Sample Metadata for ITS1/ITS2
Aggregate OTU Data Based on Taxonomy
Lowest Common Ancestor (LCA) OF EACH OTU
Barplot Of Richness For Each Level Of A Given Metadata Variable
Boxplot Of Richness For Each Level Of A Given Metadata Variable
Creat Color Palette
Create Rarefied OTU Tables
Summarize Diversity Indices for OTU Tables
Calculate True Diversity and Evenness
Show Summary of Core Taxa
Date Formatting for RAM
Plot Of Correlation Coefficient
Taxonomic Rank Formatting
Plot Venn Diagram For Two To Five Sets With Item Labels
Location Formatting
Customized Themes For GGPLOT
Calculate Dissimilarity Matrix Data
Negative Binomial Test For OTUID or Taxon
Split OTU Tables By Taxonomic Rank
Take the Transpose of an OTU Table
Filter OTU
Plot the Abundance of OTUs by Classification at a Given Taxonomic Rank
Transpose OTU Tables With LCA Annotation For Each OTU
Combine Non Overlapped OTU tables From The Same Community
Barplot Of Taxa Distribution In Groups
Get OTUs Classified at Taxonomic Rank(s)
Split Column Of Data Frame
Plot OTU Abundance at a Given Rank with Metadata Annotation
Summary Of Core OTUs
Sample ITS1 and ITS2 Data
Plot Spatial Collection Trends for Taxon Groups
Perform ADONIS Analysis for OTU Tables Or Taxonomic Abundance
Matrix
Ordination Plot For OTUs Using CCA or RDA Analysis
Plot Distribution of OTUs
Plot The Geographic Location of Samples
Visualize The Negative Binomial Model OF A Given Taxon OR OTUID
Summarize OTU
Plot The Geographic Location of Samples
Plot Distance Matrix Heatmap for OTU Samples
Summary of Shared OTUs Across ALL Subjects
Subset OTU And Metadata
Plot a Heatmap Showing OTU Abundance by Taxonomic Classification
Filter Taxonomic Abundance Matrix by Total Counts Or
Maximum Relative Abundance
Match Samples In Ecology Data Sets and Metadata
Create a PCoA plot for an OTU Table
Fill Missing Taxonomic Information
Write Data To CSV File
Plot Hierarchical Cluster Of Samples Based on OTU Table or Taxonomic
Abundance Matrix
Plot the Geographic Location of Samples
Boxplot Of Distribution Of Taxa In Each Level of A Metadata Variable
Reset OTU
Load Metadata Table
Plot Indicator Taxon Groups for Metadata Trends
Plot Hierarchical Cluster Of Metadata
Validate an OTU Table
Validate And Reformat The OTU Taxonomy Column
Open Metadata Table
Barplot Of Distribution Of Taxa In Groups
Boxplot To Compare Diversity Indices Among Groups
Analysis of Amplicon-Based Metagenomic Data
Plot Temporal Trends for Metadata and Taxon Groups
Calculate Percent of OTUs Classified at a Given Taxonomic Rank
Plot Dissimilarity Matrix Data for Different Methods
Open OTU Table
Transform OTU Table