datasets

Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.

Wen Chen

R for Amplicon-Sequencing-Based Microbial-Ecology

meta function

A data frame with 16 observations on the following 10 
  variables.
  <dl>
    <dt><code>Sample</code></dt><dd>a factor with levels <code>Sample1</code>
      <code>Sample2</code> <code>Sample3</code> <code>Sample4</code> 
      <code>Sample5</code> <code>Sample6</code> <code>Sample7</code> 
      <code>Sample8</code></dd> <dt><code>City</code></dt><dd>a factor with levels <code>City1</code> 
      <code>City2</code></dd> <dt><code>Crop</code></dt><dd>a factor with levels <code>Crop1</code> 
      <code>Crop2</code></dd> <dt><code>Plots</code></dt><dd>a factor with levels <code>1</code> <code>2</code></dd> <dt><code>Harvestmethod</code></dt><dd>a factor with levels 
      <code>Method1</code> <code>Method2</code></dd> <dt><code>Harvestdate</code></dt><dd>a Date</dd> <dt><code>Ergosterol_ppm</code></dt><dd>a numeric vector</dd> <dt><code>Province</code></dt><dd>a character vector</dd> <dt><code>Latitude</code></dt><dd>a numeric vector</dd> <dt><code>Longitude</code></dt><dd>a numeric vector</dd> </dl> 

meta: Sample Metadata for ITS1/ITS2

Description

Usage

Arguments

Format

Source

Examples