Match Samples In Ecology Data Sets and Metadata
Plot OTU Abundance at a Given Rank with Metadata Annotation
Date Formatting for RAM
Calculate True Diversity and Evenness
Creates Nodes and Edge-List For An OTU Table
Plot Hierarchical Taxonomic Tree with Relative Abundance
Transpose OTU Tables With LCA Annotation For Each OTU
Plot the Top Taxon Groups
Ordination Plot For Taxa Groups Using CCA or RDA Analysis
Plot Of Correlation Coefficient
Creating Plots with RAM
Analysis of Amplicon-Based Metagenomic Data
Load Metadata Table
Filter Taxonomic Abundance Matrix by Total Counts Or
Maximum Relative Abundance
Lowest Common Ancestor (LCA) OF EACH OTU
Factor Formatting for RAM
Negative Binomial Test For OTUID or Taxon
Transform OTU Table
Plot Hierarchical Cluster Of Samples Based on OTU Table or
Taxonomic Abundance Matrix
Summary of Shared Taxa Across ALL Subjects
Barplot Of Distribution Of Taxa In Groups
Plot Spatial Collection Trends for Taxon Groups
Subset OTU And Metadata
Calculate Dissimilarity Matrix Data
Summary of Shared OTUs Across ALL Subjects
Fill Missing Taxonomic Information
Plot the Abundance of OTUs by Classification at a Given
Taxonomic Rank For Each Level of A Metadata Category Variable.
Boxplot Of Richness For Each Level Of A Given Metadata Variable
Location Formatting
Calculate Percent of OTUs Classified at a Given Taxonomic Rank
Ordination Plot For OTUs Using CCA or RDA Analysis
Summarize OTU
Plot Dissimilarity Matrix Data for Different Methods
Select METADATA Variables
Plot the Abundance of OTUs by Classification at a Given
Taxonomic Rank
Open Metadata Table
Sample ITS1 and ITS2 Data
Plot The Geographic Location of Samples
Summarize Diversity Indices for OTU Tables
Barplot Of Richness For Each Level Of A Given Metadata Variable
Validate an OTU Table
Plot Intra And Inter Specific Variation For An Alignment
Get OTUs Classified at Taxonomic Rank(s)
Show Summary of Core Taxa
Sample Alignment
Data Input Formatting
Taxonomic Rank Formatting
Split Column Of Data Frame
Plot Indicator Taxon Groups for Metadata Trends
Plot the Geographic Location of Samples
Plot Hierarchical Taxonomic Tree
Reset OTU
Plot a Heatmap Showing OTU Abundance by Taxonomic Classification
Plot Venn Diagram For Two To Five Sets With Item Labels
Sample Metadata for ITS1/ITS2
Perform CCA and RDA Analysis for OTU Tables
Create a PCoA plot for an OTU Table
Plot Distribution of OTUs
Split OTU Tables By Taxonomic Rank
Summary Of Core OTUs
Write Data To CSV File
Aggregate OTU Data Based on Taxonomy
Create Rarefied OTU Tables
Open OTU Table
Combine Non Overlapped OTU tables From The Same Community
Fast Load Large OTU Table
Plot Distance Matrix Heatmap for OTU Samples
Take the Transpose of an OTU Table
Visualize The Negative Binomial Model OF A Given Taxon OR OTUID
Creat Color Palette
Plot the Abundance of OTUs by Classification at a Given
Taxonomic Rank
Validate And Reformat The OTU Taxonomy Column
Barplot Of Taxa Distribution In Groups
Plot Temporal Trends for Metadata and Taxon Groups
Filter OTU
Boxplot To Compare Diversity Indices Among Groups
Plot The Geographic Location of Samples
Plot Hierarchical Cluster Of Metadata
Summary Of Core OTUs
Boxplot Of Taxa In Each Level of A Metadata Variable
Perform ADONIS Analysis for OTU Tables Or Taxonomic Abundance
Matrix
Customized Themes For GGPLOT