Learn R Programming

RChronoModel (version 0.4)

Post-Processing of the Markov Chain Simulated by ChronoModel or Oxcal

Description

Provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology. The functions can also be applied to the analyse of mcmc output generated by Oxcal software.

Copy Link

Version

Install

install.packages('RChronoModel')

Monthly Downloads

177

Version

0.4

License

GPL

Maintainer

Anne Philippe

Last Published

January 12th, 2017

Functions in RChronoModel (0.4)

Test for the existence of a hiatus between two parameters

MarginalStatistics

Marginal summary statistics

Bayesian test for anteriority / posteriority between two parameters

Plot of the endpoints of credible intervals or HPD intervals of a series of dates

CreateMinMaxGroup

Constructing the minimum and the maximum for a group of dates(phase)

MultiCredibleInterval

Bayesian credible intervals for a series of dates

CredibleInterval

Bayesian credible interval

Importing a CSV file containing the output of the MCMC algorithm

Bayesian highest posterior density regions for a series of MCMC chains

MultiPhaseTimeRange

Phase Time Range for multiple phases

MultiSuccessionPlot

Successive Phases Density Plots (for phases in temporal order constraint)

Plot of the marginal posterior densities of a phase

MultiPhasesTransition

Transition range for a succession of phases (for phases in temporal order constraint)

Gap/Hiatus between a succession of phases (for phases in temporal order constraint)

Gap or Hiatus between two successive phases (for phases in temporal order constraint)

PhasesTransition

Transition range between two successive phases (for phases in temporal order constraint)

PhaseDurationPlot

Plot of the marginal posterior densities of the duration of a phase

PhaseStatistics

Summary statistics for a phase

TempoActivityPlot

Plot of the activity of events

Plot of the occurence of events

Phase Time Range

Density Plots of two successive phases (for phases in temporal order constraint)

Plot of a marginal posterior density

Plot of the marginal posterior densities of several phases