baseTemperatureType


Parent class for inner usage. Inherits: <a rd-options="" href="/link/rdmlBaseType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.


datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram
visualization for the structure of RDML object.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

baseTemperatureType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=0.9-1" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<code>baseTemperatureType$new(duration,
  temperatureChange = NULL,  durationChange = NULL, measure = NULL, ramp =
  NULL)</code>

Initialization

<dl>
  <dt><code>duration</code></dt><dd><a rd-options="assertthat" href="/link/is.count?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.count">is.count</a>. The duration of this
  step in </dd>
 seconds. <dt><code>temperatureChange</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>. The
  change of the temperature from one cycle to the next: actual temperature
  = temperature + (temperatureChange * cycle counter)</dd> <dt><code>durationChange</code></dt><dd><a rd-options="assertthat" href="/link/is.count?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.count">is.count</a>. The change of the
  duration from one cycle to the next: actual duration = duration +
  (durationChange * cycle counter)</dd>
 <dt><code>measure</code></dt><dd><a rd-options="" href="/link/measureType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::measureType">measureType</a>.
  Indicates to make a measurement and store it as meltcurve or real-time
  data.</dd>
 <dt><code>ramp</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>. The allowed temperature
  change from one step to the next in degrees Celsius per second. No value
  means maximal change rate.</dd> </dl> 

baseTemperatureType: baseTemperatureType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields