reactType: reactType R6 class.

Description

A reaction is an independent chemical reaction corresponding for example to a well in a 96 well plate, a capillary in a rotor, a through-hole on an array, etc. Inherits: rdmlBaseType.

Usage

reactType

Arguments

Format

An R6Class generator object.

Initialization

reactType$new(id, sample, data = NULL)

Fields

id: reactIdType. See 'Details'.
sample: idReferencesType. SampleID - A reference to a sample.
data: list of dataType.

Methods

Position(pcrformat): Converts react id to thew human readable form (i.e. '13' -> 'B1'). pcrFormat is pcrFormatType. Only for 'ABC' '123' format!

Details

The ID of this reaction

Schemas :

rotor : assign IDs according to the position of the sample on the rotor (1 for the 1st sample, 2 for the 2nd, ...)
plate (96/384/1536 well) : the IDs are assigned in a row-first/column-second manner. For each row, the samples are numbered according to the increasing column number. At the end of a row, the numbering starts at the first column of the next row. An example for this type of plate can be found below :
1 2 3
... A 1 2
3 B 13
14
or
1 2 3
... 1 1 2
3 2 13
14

multi-array plate (BioTrove) : the IDs are assigned in a row-first/column-second manner, ignoring the organisation of sub-arrays. For each row, the samples are numbered according to the increasing column number. At the end of a row, the the next row. An example for this type of plate can be found below : todo...

	1	2	3
...	A	1	2
3		B	13
14

	1	2	3
...	1	1	2
3		2	13
14