runType


A run is a set of reactions performed in one "run", for example one plate,
one rotor, one array, one chip.Inherits: <a rd-options="" href="/link/rdmlBaseType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.


datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram
visualization for the structure of RDML object.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

runType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=0.9-1" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<code>runType$new(id, description = NULL,
  documentation = NULL, experimenter = NULL, instrument = NULL,
  dataCollectionSoftware = NULL, backgroundDeterminationMethod = NULL,
  cqDetectionMethod = NULL, thermalCyclingConditions = NULL, pcrFormat,
  runDate = NULL, react = NULL)</code>

Initialization

<dl>
<dt><code>id</code></dt><dd><a rd-options="" href="/link/idType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idType">idType</a>.</dd> <dt><code>description</code></dt><dd><a rd-options="assertthat" href="/link/is.string?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.string">is.string</a>.</dd> <dt><code>documentation</code></dt><dd><code>list</code> of <a rd-options="" href="/link/idReferencesType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd> <dt><code>experimenter</code></dt><dd><code>list</code> of <a rd-options="" href="/link/idReferencesType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd> <dt><code>instrument</code></dt><dd><a rd-options="assertthat" href="/link/is.string?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.string">is.string</a>. Description of the
  instrument used to aquire the data.</dd> <dt><code>dataCollectionSoftware</code></dt><dd><a rd-options="" href="/link/dataCollectionSoftwareType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::dataCollectionSoftwareType">dataCollectionSoftwareType</a>.
  Description of the software used to analyze/collect the data.</dd> <dt><code>backgroundDeterminationMethod</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>.
  Description of method used to determine the background. </dd> <dt><code>cqDetectionMethod</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>. Description of method
  used to calculate the quantification cycle. </dd> <dt><code>thermalCyclingConditions</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>. The program
  used to aquire the data.</dd>
 <dt><code>pcrFormat</code></dt><dd><a rd-options="" href="/link/adpsType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::adpsType">adpsType</a>.</dd> <dt><code>runDate</code></dt><dd><a rd-options="" href="/link/adpsType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::adpsType">adpsType</a>. Date and time stamp when the data
  was aquired.</dd>
 <dt><code>react</code></dt><dd><code>list</code> of <a rd-options="" href="/link/adpsType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::adpsType">adpsType</a>.</dd>
 </dl> 

runType: runType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields

Methods