targetType


A target is a defined PCR reaction. PCR reactions for the same gene which
differ in primer sequences are considered different targets.Inherits:
<a rd-options="" href="/link/rdmlBaseType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.


datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram
visualization for the structure of RDML object.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

targetType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=0.9-1" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<code>targetType$new(id, description = NULL,
  documentation = NULL, xRef = NULL, type, amplificationEfficiencyMethod =
  NULL, amplificationEfficiency = NULL, amplificationEfficiencySE = NULL,
  detectionLimit = NULL, dyeId, sequences = NULL, commercialAssay = NULL)</code>

Initialization

<dl>
<dt><code>id</code></dt><dd><a rd-options="" href="/link/idType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idType">idType</a>.</dd> <dt><code>description</code></dt><dd><a rd-options="assertthat" href="/link/is.string?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.string">is.string</a>.</dd> <dt><code>documentation</code></dt><dd><code>list</code> of <a rd-options="" href="/link/idReferencesType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd> <dt><code>xRef</code></dt><dd><code>list</code> of <a rd-options="" href="/link/xRefType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::xRefType">xRefType</a>.</dd> <dt><code>type</code></dt><dd><a rd-options="" href="/link/targetTypeType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::targetTypeType">targetTypeType</a>.</dd> <dt><code>amplificationEfficiencyMethod</code></dt><dd><a rd-options="assertthat" href="/link/is.string?package=RDML&version=0.9-1&to=assertthat" data-mini-rdoc="assertthat::is.string">is.string</a>.</dd> <dt><code>amplificationEfficiency</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>.</dd> <dt><code>amplificationEfficiencySE</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>.</dd> <dt><code>detectionLimit</code></dt><dd><a rd-options="base" href="/link/double?package=RDML&version=0.9-1&to=base" data-mini-rdoc="base::double">double</a>.</dd> <dt><code>dyeId</code></dt><dd><a rd-options="" href="/link/idReferencesType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd> <dt><code>sequences</code></dt><dd><a rd-options="" href="/link/sequencesType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::sequencesType">sequencesType</a>.</dd> <dt><code>commercialAssay</code></dt><dd><a rd-options="" href="/link/commercialAssayType?package=RDML&version=0.9-1" data-mini-rdoc="RDML::commercialAssayType">commercialAssayType</a>.</dd>
 </dl> 

targetType: targetType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields