RHybridFinder (version 0.2.0)

export_step2_results: export_step2_results

Description

this function allows to export the results generated from step2_wo_netmhcpan.

Usage

export_step2_results(step2_RHF_results_Exp1, export_dir)

Arguments

step2_RHF_results_Exp1

the results generated from running step2_wo_netMHCpan()

export_dir

the export directory where you would like to have the .csv file saved.

Value

exports a folder containing 2 files

1. the peptide list to be entered in a netMHCpan-ready format,(.csv)

2. the updated database search results which contain the categorizatiosn of the peptides found in common between the 2nd database search and the HybridFinder function (.csv file)

Details

Since netMHCpan is not compatible with Windows OS, the package offers an alternative by outputting the input for netMHCpan and as well the database results with their respective categorizations (cis, trans) established in step1.

Examples

# NOT RUN {
 export_step2_results(results_step2_Human_Liver_AUTD17, folder_Human_Liver_AUTD17)
# }