Learn R Programming

RHybridFinder (version 0.2.0)

Identification of Hybrid Peptides in Immunopeptidomic Analyses

Description

Tool for the analysis Mass Spectrometry (MS) data in the context of immunopeptidomic analysis for the identification of hybrid peptides and the predictions of binding affinity of all peptides using 'netMHCpan' while providing a summary of the netMHCpan output. 'RHybridFinder' (RHF) is destined for researchers who are looking to analyze their MS data for the purpose of identification of potential spliced peptides. This package, developed mainly in base R, is based on the workflow published by Faridi et al. in 2018 .

Copy Link

Version

Install

install.packages('RHybridFinder')

Monthly Downloads

226

Version

0.2.0

License

MIT + file LICENSE

Maintainer

Frederic Saab

Last Published

August 17th, 2021

Functions in RHybridFinder (0.2.0)

export_step2_results

export_step2_results
step2_wo_netMHCpan

step2_wo_netMHCpan
HybridFinder

HybridFinder
db_Human_Liver_AUTD17

db_Human_Liver_AUTD17
mhc_check

mhc_check
checknetMHCpan

checknetMHCpan
export_HybridFinder_results

export_HybridFinder_results
netmhcpan_list_alleles

netmhcpan_list_alleles
denovo_Human_Liver_AUTD17

denovo_Human_Liver_AUTD17
db_rerun_Human_Liver_AUTD17

db_rerun_Human_Liver_AUTD17
export_checknetmhcpan_results

export_checknetmhcpan_results