findMsMsHR
now supports the same parameters (use named
parameters).
findMsMsHR.direct(msRaw, cpdID, mode = "pH", confirmMode = 0, useRtLimit = TRUE, ppmFine = getOption("RMassBank")$findMsMsRawSettings$ppmFine, mzCoarse = getOption("RMassBank")$findMsMsRawSettings$mzCoarse, fillPrecursorScan = getOption("RMassBank")$findMsMsRawSettings$fillPrecursorScan, rtMargin = getOption("RMassBank")$rtMargin, deprofile = getOption("RMassBank")$deprofile, headerCache = NULL)