Find the exact mass +/- a given margin for a given formula or its ions and adducts.
Check validity of formula
Load compound list for RMassBank
Return MS1 peaks to be used for recalibration
Generate peaks cache
Reanalyze unmatched peaks
Compile MassBank records
Combine workspaces for multiplicity filtering
Create Rcdk molecule from SMILES
filterMultiplicity
Update settings to current version
Generate list of problematic peaks
Plots mbWorkspaces
Extract MS/MS spectra for specified precursor
Retrieve annotation data
Create new workspace for mbWorkflow
Extracts and processes spectra from a list of xcms-Objects
Validate MassBank records with a set of Unit tests
Select a subset of external IDs from a CTS record.
Find all available databases for a CTS record
Calculations on molecular formulas
Retrieve the Chemspider ID for a given compound
Get data frame with all present peak data
Load MassBank compound information lists
Workspace for mbWorkflow data
Recalibrate MS/MS spectra
Create new empty workspace or load saved data for msmsWorkflow
RMassBank settings
MassBank-record Addition
Convert formula to Rcdk limits
Aggregate analyzed spectra
Backup msmsWorkflow results
Add and initialize dataframe column
Convert a single ID to another using CTS.
Retrieve information from Cactus
Export internally stored MassBank data to files
Filter peaks with low accuracy
Discontinued: find MS/MS spectrum from open raw file
Select matching/unmatching peaks from aggregate table
Check if a spectra set is found, complete, empty
Write MassBank record into character array
Retrieve annotation data
Flatten, or re-read, MassBank header blocks
Generate peak annotation from peaklist
Calculate exact mass
Read in mz-files using XCMS
Determine processed steps
Compose data block of MassBank record
Workspace for msmsWorkflow data
Count MS2 spectra per compound
Conversion of XCMS-pseudospectra into RMassBank-spectra
Multiplicity filtering: Removes peaks which occur only once in a n-spectra set.
De-profile a high-resolution MS scan in profile mode.
Extract EICs
Find compound information
Extract an MS/MS spectrum from MS2 TIC
Order a chemical formula correctly
Identify intense peaks (in a list of unmatched peaks)
Plot the recalibration graph.
MassBank-record Parser
Calculate the mass from a SMILES-String
Calculate ppm values
Addition of manual peaklists
Add additional peaks to spectra
Remove electronic noise
Interconvert molecular formula representations
Search Pubchem CID
Retrieve information from CTS
MassBank record creation workflow
Select matching/unmatching peaks from aggregate table
Standard progress bar hook.
Retrieve supplemental annotation data from Pubchem
Create MOL file for a chemical structure
RMassBank settings
Write list.tsv file
Select a subset of spectra matching properties
Extracts and processes spectra from a specified file list, according to
loaded options and given parameters.
Analyze MSMS spectra
Checks for isotopes in a msmsWorkspace
Calculate Double Bond Equivalents
Filter satellite peaks
Retrieve annotation data
Select peaks from aggregate table
RMassBank mass spectrometry pipeline
Predefined recalibration functions.
Set RmbSpectrum2 data from data.frame