msmsWorkspace-class: Workspace for msmsWorkflow data
Description
A workspace which stores input and output data for msmsWorkflow.
Usage
"show"(object)
Arguments
object
The msmsWorkspace to display.
Details
Slots:
files
The input file names
spectra
The spectra per compound (RmbSpectraSet) extracted from the raw files
aggregated
A data.frame with an aggregated peak table from all spectra.
Further columns are added during processing.
rc, rc.ms1
The recalibration curves generated in workflow step 4.
parent
For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate)
before recalibration, such that the workflow can be reprocessed from start.
archivename
The base name of the files the archive is stored to during the workflow.
settings
The RMassBank settings used during the workflow, if stored with the workspace.
#'
Methods:
show
Shows a brief summary of the object and processing progress.