selectSpectra

selectSpectra,RmbSpectraSetList,character-method

selectSpectra,msmsWorkspace,character-method

The <code>RmbSpectraSetList</code> or <code>msmsWorkspace</code> to select <code>RmbSpectraSet</code>s from.

The property to check (<code>found</code>, <code>complete</code> or <code>empty</code>)

property

<code>logical</code> if a <code>TRUE/FALSE</code> list should be returned; <code>index</code> if a vector of matching indices should be returned,
<code>object</code> if matching objects should be returned, <code>mismatch</code> if mismatching objects should be returned.

value


From a list of <code>RmbSpectraSet</code>s, returns the spectra which match a criterion (found, complete, empty as in <code><a rd-options="" href="/link/checkSpectra?package=RMassBank&version=2.0.0" data-mini-rdoc="RMassBank::checkSpectra">checkSpectra</a></code>).
This can be returned either as a <code>TRUE/FALSE</code> vector, as a vector of indices for matching elements, as a vector of <code>RmbSpectraSet</code> objects
matching the conditions, or as a vector of <code>RmbSpectraSet</code> objects NOT matching the conditions (sic!).


Workflow to process tandem MS files and build MassBank records.
Functions include automated extraction of tandem MS spectra, formula
assignment to tandem MS fragments, recalibration of tandem MS spectra with
assigned fragments, spectrum cleanup, automated retrieval of compound
information from Internet databases, and export to MassBank records.

RMassBank at Eawag

RMassBank

Workflow to process tandem MS files and build MassBank records

selectSpectra function

<ul>
<li> <code>s = RmbSpectraSetList,property = character</code>: A method for selecting spectra from a spectra set list </li>
<li> <code>s = msmsWorkspace,property = character</code>: A method for selecting spectra from an msmsWorkspace
</li>
</ul>

Methods (by class)

<code>logical</code> if a <code>TRUE/FALSE</code> list should be returned; <code>index</code> if a vector of matching indices should be returned,
<code>object</code> if matching objects should be returned, <code>mismatch</code> if mismatching objects should be returned.

From a list of <code>RmbSpectraSet</code>s, returns the spectra which match a criterion (found, complete, empty as in <code><a href="checkSpectra" rd-options="">checkSpectra</a></code>).
This can be returned either as a <code>TRUE/FALSE</code> vector, as a vector of indices for matching elements, as a vector of <code>RmbSpectraSet</code> objects
matching the conditions, or as a vector of <code>RmbSpectraSet</code> objects NOT matching the conditions (sic!).

selectSpectra: Select a subset of spectra matching properties

Description

Usage

Arguments

Value

Methods (by class)