normalizeMainEffectQuery


  An object of class <code><a rd-options="" href="/link/RNAinteract?package=RNAinteract&version=1.20.0" data-mini-rdoc="RNAinteract::RNAinteract">RNAinteract</a></code>.



  batch is a vector if integers with length equal to the number of queries. It assigns each query to a batch. Within each batch a linear regression is estimated assuming a linear effect between the order of queries and the main effects.


batch


  batch is a vector of numbers. A linear regression is estimated fitting the main effect as a function of the time.


time


Normalize for a time effect of the query genes.


 manip 

RNAinteract estimates genetic interactions from
multi-dimensional read-outs like features extracted from
images. The screen is assumed to be performed in multi-well
plates or similar designs. Starting from a list of features
(e.g. cell number, area, fluorescence intensity) per well,
genetic interactions are estimated. The packages provides
functions for reporting interacting gene pairs, plotting
heatmaps and double RNAi plots. An HTML report can be written
for quality control and analysis.

Bernd Fischer

RNAinteract

Estimate Pairwise Interactions from multidimensional features

normalizeMainEffectQuery function

An object of class <code><a href="RNAinteract" rd-options="">RNAinteract</a></code>.

batch is a vector if integers with length equal to the number of queries. It assigns each query to a batch. Within each batch a linear regression is estimated assuming a linear effect between the order of queries and the main effects.

batch is a vector of numbers. A linear regression is estimated fitting the main effect as a function of the time.

Normalize for a time effect of the query genes.

normalizeMainEffectQuery: normalize query main effect

Description

Usage

Arguments

Value

Details

See Also

Examples