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RNOmni (version 0.1.5)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests that utilize the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two INT-based approaches, termed direct INT (DINT) and partially indirect INT (PIINT). In genome scale simulations, the omnibus test routinely provided valid inference against continuous phenotypes with skewed and heavy tailed residual distributions. Association testing against these same phenotypes via standard linear regression led to an excess of false positive associations. In addition to controlling the type I error, the omnibus approach provided power comparable to the more powerful of the component methods.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

585

Version

0.1.5

License

GPL-2

Maintainer

Zachary McCaw

Last Published

February 12th, 2018

Functions in RNOmni (0.1.5)

G

Simulated Genotypes
FIINT

Fully Indirect-INT
AvgCorr

Average Correlation Estimate.
PIINT

Partially Indirect-INT
Omni

Omnibus P-value
BootCorr

Bootstrap Correlation Estimate.
DINT

Direct-INT
RNOmni

Rank-Normal Omnibus Test
BAT

Basic Association Test
inCheck

Input Check
S

Population Structure Adjustments
X

Simulated Covariates
Y

Simulated Phenotypes
rankNormal

Rank-Normalize