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RNOmni (version 0.2.1)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests that utilize the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two complementary INT-based approaches. In simulations against phenotypes with skewed and heavy tailed residual distributions, the omnibus test provided valid inference in the absence of a genotypic effect, and provided power comparable to the more powerful of the component methods in the presence of a genotypic effect. Under these settings, standard linear regression often failed to control the type I error.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

0.2.1

License

GPL-3

Maintainer

Zachary McCaw

Last Published

April 2nd, 2018

Functions in RNOmni (0.2.1)

DINT

Direct-INT
OmniP

Omnibus P-value
IINT

Indirect-INT
AvgCorr

Average Correlation Estimate.
RNOmni

Rank-Normal Omnibus Test
FIINT

Fully Indirect-INT
BootCorr

Bootstrap Correlation Estimate.
BAT

Basic Association Test
G

Simulated Genotypes
rankNormal

Rank-Normalize
scaleParam

Scale Parameter
inCheck

Input Check
errProj

Error Projection
S

Population Structure Adjustments
eps

Residuals
X

Simulated Covariates
dotP

Dot Product
Y

Simulated Phenotypes
scoreStat

Score Statistic