Calculates sample concentrations using sigmoid model fit
Calculates sample concentrations using linear model fit
Reverse phase protein array data from original cancer specimen
slide description file
Average biological replicates over different slides.
slide description file
Selects samples from RPPA data
Calculates the concentration of serial diluted samples
Corrects for background in an RPPA data set
Reverse phase protein array data, samples from a stimulation time course
Sigmoidal curve prediction.
Draws boxplots of groups of an RPPA data set including wilcox or kruskal test.
sample description file
Dilution series intersect correction
GenePix result files
Reverse phase protein array data of siRNA transfected cell line
Multiplot function for RPPA time course datasets
Remove arrays from a RPPA data list
Normalizes data in an RPPA data list
writes an RPPA data list into csv file
Reverse phase protein array rawdata, samples serially diluted
Data preprocessing
Estimates error model parameters sigma0 (basal error) and sigmaR (relative error) and produces a new data.frame with the signals and error model parameters.
Plot target and blank signal from RPPA control samples
Logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities
Tests for correlations in RPPA data
Aggregate the replicates in an RPPA data set
Reverse phase protein array rawdata, samples serially diluted
sample description file
Draw a heatmap with column side colors from a RPPA data
Select the highest concentration from serialy diluted samples
Selects the measurement samples from an RPPA data list
Read and Annotate RPPA rawdata
Draw time course from RPPA data
Scatter Plots from an RPPA data
Convert RPPA data into Expression Set
Read, annotate and normalize reverse phase protein array data and get a brief overview on the biological impact.
Draws boxplots of groups of an RPPA data set.
qq-plot and qq-line of an RPPA data set