Select the highest concentration from serialy diluted samples
Multiplot function for RPPA time course datasets
qq-plot and qq-line of an RPPA data set
Scatter Plots from an RPPA data
Draw a heatmap with column side colors from a RPPA data
Reverse phase protein array data, samples from a stimulation time course
Draws boxplots of groups of an RPPA data set.
slide description file
Reverse phase protein array data from original cancer specimen
Plot target and blank signal from RPPA control samples
Draw time course from RPPA data
sample description file
Draws boxplots of groups of an RPPA data set including wilcox or kruskal test.
writes an RPPA data list into csv file
slide description file
Aggregate the replicates in an RPPA data set
Convert RPPA data into Expression Set
Tests for correlations in RPPA data
Selects the measurement samples from an RPPA data list
Read, annotate and normalize reverse phase protein array data and get a brief overview on the biological impact.
sample description file
Read and Annotate RPPA rawdata
Remove arrays from a RPPA data list
Reverse phase protein array rawdata, samples serially diluted
Selects samples from RPPA data
Calculates sample concentrations using linear model fit
Sigmoidal curve prediction.
Average biological replicates over different slides.
Data preprocessing
Estimates error model parameters var0 (basal variance) and varR (relative variance) and produces a new data.frame with the signals and error model parameters.
GenePix result files
Reverse phase protein array rawdata, samples serially diluted
Calculates sample concentrations using sigmoid model fit
Reverse phase protein array data of siRNA transfected cell line
Calculates the concentration of serial diluted samples
Dilution series intersect correction
Corrects for background in an RPPA data set
Logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities
Normalizes data in an RPPA data list